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Open codes

Open codes#

Contribution to the development of open source codes

Warning

🚧 This page is still under construction 🚧

CAGS#

The Catalog of Agrogeophysical Survey is a platform putting together a database/catalog of agrogeophysical surveys in order to promote FAIR practicies and boost future research.

  • Catalog

  • Notebooks

  • Geophysical Metadata manager

github

The catalog is part of the FAIRsharing platform - See its related databases.

FAIRsharing.org: CAGS; Catalog of Agrogeophysical Studies, FAIRsharing ID: http://beta.fairsharing.org/3765, Last Edited: Monday, January 31st 2022, 7:26, Last Editor:delphinedauga,Last Accessed: Wednesday, February 2nd 2022, 18:57

pyTSEB#

Open-source python package aiming at inverting Land Surface Temperature data using the energy balance formulation by [4].

github

Contributions#

  • Fixing bugs

  • Code documentation

How to install#

Install using setup.py:

git clone https://github.com/hectornieto/pyTSEB
cd pyTSEB
python setup.py develop|install
import pyTSEB

Or you can create a conda environment:

conda env create -f environment.yml

How to use#

See github documentation

Notebook example#

How to cite#

Warning

Found a bug 🐛/ a typo ? Email me

pyDEXP#

Open-source python package aiming at processing potential field data using the dEXP theory formulated by [2].

github

How to install#

Install using setup.py:

git clone https://github.com/BenjMy/dEXP_imaging
cd dEXP_imaging
python setup.py develop|install
import dEXP

How to use#

Notebook example#

🧮 Code repository

How to cite#

Mary, B., Peruzzo, L., Wu, Y., and Cassiani, G. (2022). Advanced Potential Field Analysis Applied to Mise‐à‐la‐Masse Surveys for Leakage Detection. JGR Solid Earth 127. doi:10.1029/2022JB024747

Warning

Found a bug 🐛/ a typo ? Email me

pyCATHY#

Open-source python package wrapper aiming at coupling hydrological forward modelling with geophysical data by [1].

github

../_images/pressure_slow.gif

Fig. 11 Result of a controlled irrigation in a rhizotron using CATHY © B. Mary#

How to install#

Install using setup.py:

git clone https://github.com/BenjMy/pycathy_wrapper
cd pycathy_wrapper
python setup.py develop|install
import pyCATHY

How to use#

Notebook example#

The CATHY repository provides the [6] dataset example to test the installation. On top of that, we provide a computational notebook code to reproduce the results using the pyCATHY wrapper (BenjMy/pycathy_wrapper).

The notebook illustrate how to work interactively: execute single cell, see partial results at different processing steps (preprocessing, processing, output)… You can share it to work collaboratively on it by sharing the link and execute it from another PC without any installation required.

Saturated area dynamics and streamflow generation from coupled surface–subsurface simulations and field observations Weill, S., Altissimo, M., Cassiani, G., Deiana, R., Marani, M., Putti, M. (2013) Advances in Water Resources. 10.1016/j.advwatres.2013.06.007

Open In Colab

How to cite#

Warning

Found a bug 🐛/ a typo ? Email me

iCSD#

Inversion of Current Source Density data. Application to imaging of plant roots.

github

How to install#

Install using setup.py:

git clone https://github.com/BenjMy/icsd_dev
cd icsd_dev
python setup.py develop|install
import icsd

How to use#

How to cite#

Warning

Found a bug 🐛/ a typo ? Email me

Glossary#

FAIR#

FAIR data are data which meet principles of findability, accessibility, interoperability, and reusability.[1]

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